The MORTAR (MOlecule fRagmenTAtion fRamework) application performs and visualises the fragmentation of a set of molecules in various ways and provides basic analysis features. Fragmentation algorithms can be integrated and developed within MORTAR by using a specific wrapper class. In addition, fragmentation pipelines with any combination of the available fragmentation methods can be carried out. All cheminformatics functionalities in MORTAR, are implemented based on the Chemistry Development Kit (CDK).
Bänsch, F., Schaub, J., Sevindik, B. et al. MORTAR: a rich client application for in silico molecule fragmentation. J Cheminform 15, 1 (2023). https://doi.org/10.1186/s13321-022-00674-9